Dicom - Revision history

Melodie at 17:53, 26 November 2024

2024-11-26T17:53:51Z

← Older revision		Revision as of 17:53, 26 November 2024
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	Here are some ways to access the Dicom server.		Here are some ways to access the Dicom server.

			==Storage Policy==
			Data is stored on the DICOM server for 5 years, then deleted.
			Data more than 2 years old may be moved to archive folders for space management. Please email ccnsupport@g.ucla.edu for help if you are having trouble finding data between 2-5 years old.


	==SSH - Command Line==		==SSH - Command Line==

2024-03-28T22:12:22Z

← Older revision		Revision as of 22:12, 28 March 2024
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	Use [https://www.hoffman2.idre.ucla.edu/access/login/ Putty] for SSH terminal. See [https://www.hoffman2.idre.ucla.edu/Using-H2/Connecting/Connecting.html Hoffman's documentation] for instructions on how to connect and set up functionality (such as running GUI applications).		Use [https://www.hoffman2.idre.ucla.edu/access/login/ Putty] for SSH terminal. See [https://www.hoffman2.idre.ucla.edu/Using-H2/Connecting/Connecting.html Hoffman's documentation] for instructions on how to connect and set up functionality (such as running GUI applications).

			==Accessing DICOM Remotely==
			If you want to access the DICOM server from off-campus, you will need to either use a Mednet-specific VPN or log into Hoffman2 first, then ssh into DICOM. Trying to ssh into DICOM directly from a general UCLA VPN (or no VPN) will result in your login request hanging until it times out.

	==Sharing File Systems with Mac==		==Sharing File Systems with Mac==

2024-03-01T18:56:34Z

From SSH command line

← Older revision		Revision as of 18:56, 1 March 2024
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	===From SSH command line===		===From SSH command line===

	After login to Hoffman2, run the following commands from one of the Hoffman2 server		After login to Hoffman2, run one of the following commands from one of the Hoffman2 server

	scp -r dicomuserID@dicomserver:/path/to/group_directory/subject /path/to/your_directory/		scp -r dicomuserID@dicomserver:/path/to/group_directory/subject /path/to/your_directory/

2024-01-19T18:30:14Z

From SSH command line

← Older revision		Revision as of 18:30, 19 January 2024
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	===From SSH command line===		===From SSH command line===

	scp -r dicomuserID@dicomserver:/path/to/group_directory/subject ~~hoffmanID@hoffman2.idre.ucla.edu:~~/path/to/your_directory/		After login to Hoffman2, run the following commands from one of the Hoffman2 server

			scp -r dicomuserID@dicomserver:/path/to/group_directory/subject /path/to/your_directory/

	or		or

	rsync -av dicomuserID@dicomserver:/path/to/group_directory/subject ~~hoffmanID@hoffman2.idre.ucla.edu:~~/path/to/your_directory/		rsync -av dicomuserID@dicomserver:/path/to/group_directory/subject /path/to/your_directory/

	===Script ===		===Script ===

	[https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:Scripts:setup_subject_3 setup_subject] script is used to copy files from Dicom to Hoffman2, and do other processing such as nifti convert.		[https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:Scripts:setup_subject_3 setup_subject] script is used to copy files from Dicom to Hoffman2, and do other processing such as nifti convert.

2023-08-04T17:50:24Z

SSH - Command Line

← Older revision		Revision as of 17:50, 4 August 2023
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	ssh login_id@dicomservername		ssh login_id@dicomservername
	where login_id is replaced by your user account ID.		where login_id is replaced by your user account ID.
	The server host name will be sent by email when you receive your account.		The server host name will be sent by email when you receive your account. For CCN, it should be dcm.semel.ucla.edu. You will then need to enter your dicom server password.

	After login, you will be under your home directory, /user/userid/		After login, you will be under your home directory, /user/userid/
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	(/path/to/group_directory should be sent to you together with your account information)		(/path/to/group_directory should be sent to you together with your account information)
			For CCN, this will be /data/dicom/your_lab_folder_name

	===Windows===		===Windows===

2023-01-13T23:24:38Z

← Older revision		Revision as of 23:24, 13 January 2023
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	==Copy files to Hoffman2==		==Copy files to Hoffman2==
			Please note that copying files off the Dicom server takes much longer when the scanner is in active use, due to the system prioritizing incoming data. As such, you may want to check the scanner calendar and wait for off hours or gaps in the schedule to do your download.

	===From SSH command line===		===From SSH command line===

2022-12-13T22:52:37Z

Windows

← Older revision		Revision as of 22:52, 13 December 2022
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	===Windows===		===Windows===

	Use [https://www.hoffman2.idre.ucla.edu/access/login/ Putty] for SSH terminal		Use [https://www.hoffman2.idre.ucla.edu/access/login/ Putty] for SSH terminal. See [https://www.hoffman2.idre.ucla.edu/Using-H2/Connecting/Connecting.html Hoffman's documentation] for instructions on how to connect and set up functionality (such as running GUI applications).

	==Sharing File Systems with Mac==		==Sharing File Systems with Mac==

2022-12-13T22:48:03Z

Sharing File Systems with Mac

← Older revision		Revision as of 22:48, 13 December 2022
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	==Sharing File Systems with Mac==		==Sharing File Systems with Mac==

	You can mount Dicom file system to your local Mac computer using SSHFS		You can mount the Dicom file system to your local Mac computer using SSHFS

	Please follow ~~this~~ similar [https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:Sharing_Filesystems ~~instruction~~] for Hoffman2		Please follow these similar [https://www.ccn.ucla.edu/wiki/index.php/Hoffman2:Sharing_Filesystems instructions] for Hoffman2

	Usage:		Usage:

2022-12-13T22:47:13Z

SSH - Command Line

← Older revision		Revision as of 22:47, 13 December 2022
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	After login, you will be under your home directory, /user/userid/		After login, you will be under your home directory, /user/userid/

	To access the group directory, ~~using~~		To access the group directory, use

	cd /path/to/group_directory		cd /path/to/group_directory
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	===Windows===		===Windows===

	~~Using~~ [https://www.hoffman2.idre.ucla.edu/access/login/ Putty] for SSH terminal		Use [https://www.hoffman2.idre.ucla.edu/access/login/ Putty] for SSH terminal

	==Sharing File Systems with Mac==		==Sharing File Systems with Mac==

2022-10-04T20:36:37Z

← Older revision		Revision as of 20:36, 4 October 2022
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	To apply for a Dicom server account,		To apply for a Dicom server account,

	Send email with the following information to the CCN ~~system admin~~:		Send an email with the following information to the CCN Programmer Analyst [mailto:jonhernandez@mednet.ucla.edu Jonathan Hernandez].

	1. Your Hoffman2 account ID if you have one.		1. Your Hoffman2 account ID if you have one.